| Package |
SVAlignR |
| Version |
0.10.4 |
| Date |
2026-06-18 |
| Title |
Recovering Structure of Long Molecules from Structural Variation DataAuthors@R: person(given = c("Kevin", "R."), family = "Coombes", role = c("aut", "cre"), email = "krc@silicovore.com") |
| Description |
Implements a method to combine multiple levels of multiple sequence alignment to uncover the structure of complex DNA rearrangements. |
| Depends |
R (>= 4.4) |
| Imports |
methods, graphics, grDevices, oompaBase, Biostrings, NameNeedle, dendextend, ape, stringr, igraph, Polychrome, colorspace |
| Suggests |
msa, viridisLite, R.rsp, knitr, rmarkdown |
| VignetteBuilder |
R.rsp |
| License |
Apache License (== 2.0) |
| URL |
http://oompa.r-forge.r-project.org/ |
| NeedsCompilation |
no |
| Packaged |
2026-09-22 18:52:17 UTC; KRC |
| Author |
Kevin R. Coombes [aut, cre] |
| Maintainer |
Kevin R. Coombes <krc@silicovore.com> |
| Built |
R 4.6.1; ; 2026-09-22 18:53:23 UTC; windows |
| User Manual | SVAlignR-manual.pdf |
| R CHECK | 00check.log |
| Vignettes |
SVAlignR.html |
![OOMPA logo](../tuba2.gif")