| Package |
WayFindR |
| Version |
0.7.0 |
| Date |
2026-01-08 |
| Title |
Computing Graph Structures on WikiPathwaysAuthors@R: c(person("Kevin R.", "Coombes", role = c("aut", "cre"), email = "krc@silicovore.com"), person("Polina", "Bombina", role = c("aut"), email = "pbombina@augusta.edu")) |
| Description |
Converts pathways from 'WikiPathways' GPML format or 'KEGG' KGML format into 'igraph' objects. Includes tools to find all cycles in the resulting graphs and determine which ones involve negative feedback (inhibition). |
| Depends |
R (>= 3.5) |
| Imports |
graphics, utils, XML, igraph, KEGGREST, DescTools, Rgraphviz |
| Suggests |
knitr, rmarkdown, Polychrome, AnnotationDbi, org.Hs.eg.db |
| License |
Artistic-2.0 |
| URL |
http://oompa.r-forge.r-project.org/ |
| VignetteBuilder |
knitr |
| NeedsCompilation |
no |
| Packaged |
2026-09-22 20:08:03 UTC; KRC |
| Author |
Kevin R. Coombes [aut, cre], Polina Bombina [aut] |
| Maintainer |
Kevin R. Coombes <krc@silicovore.com> |
| Built |
R 4.6.1; ; 2026-09-22 20:09:11 UTC; windows |
| User Manual | WayFindR-manual.pdf |
| R CHECK | 00check.log |
| Vignettes |
formal_mim_spec.pdf, WayFindR_getStarted.html, WayFindR_metrics.html, WayFindR_plots.html |
![OOMPA logo](../tuba2.gif")